rs3144284 SNP Detail

Summary

• ID
  rs3144284
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118536492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCCC ATCAGCATCC AGGTGACACT
  S
  TCCACTCCCA GGAAGGTGAC AGGCA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147310223	ENSMUSSNP157113	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss320471383	CHEV_2_118531747	CHEVERUD	SCREENING_POP	f	SNP				C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs3144284					SNP	G	G	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118536492 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12089	CpG island 12089	1315 bp distal
Plcb2	phospholipase C, beta 2	mRNA-UTR
Rr563307	regulatory region 563307	1558 bp distal
Rr563308	regulatory region 563308	456 bp proximal
Rr563309	regulatory region 563309	545 bp proximal