rs3144286 SNP Detail

Summary

• ID
  rs3144286
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118536712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCT CCCCAGCCCC TCTTCCCAAG
  W
  GCCTCCCTGA ACCAGCTCAG CTTTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320471385	CHEV_2_118531967	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs3144286					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118536712 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12089	CpG island 12089	1535 bp distal
Plcb2	phospholipase C, beta 2	1286 bp downstream
Rr563307	regulatory region 563307	1778 bp distal
Rr563308	regulatory region 563308	236 bp proximal
Rr563309	regulatory region 563309	325 bp proximal