rs31443516 SNP Detail

Summary

• ID
  rs31443516
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:76131056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAGCTAA CTTGGTTAGA
  GCCACTCTCT CCTTTTGAGC TTGGTGACAC ATGCACGTAC ACACAGTGAA TAGTTTCAAT
  GTACAGACAG TGAGAGAAAC ATCTTGTCTT GCCCCGTGTT CCTCTCTCTC TGCAGTAGTA
  CTCTAAGTCA GGTATGTTTT CTTGTGTTTA CAAACATCTA CGCTCATGTA GAAATAGCTG
  K
  TTTTTATTAT TGTAACCAGC ATCTTACAAA AAGCAGTTTA AAAAGTTTAT CCTCTTCACA
  TTATGCAGAG TTCCTATCAC CTACAATTAA TATTTGTTTA ATTTTCATAT TTACTTATTT
  GATGGGTACA AGTGCTTTTC TGCCTTTGTG TTTGCACAGG TATGTGTACC AAGTGTGTGT
  CTGCTGATCA GAAGGCACTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49239555	NES12514974	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31443516					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49239555	NES12514974	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:76131056 () rs orientation: forward

Symbol	Name	Function Class
Gm52138	predicted gene, 52138	within coordinates
Gm62917	predicted gene, 62917	1970 bp upstream
Rr296309	regulatory region 296309	1134 bp distal
Rr300347	regulatory region 300347	513 bp distal