TCCTGTCACT GATGAATTTG TCACATAAAT GCTTTACTCC AGGGCTACTT TTTCATGGCT GTTCTTCCAA TGAACTTAAT GCTATGCCCA GGCGTGCTCT TCCCTTGGAA AGGGTGCTGT TTATCAACAT TAAGCCTAGG CACTGTACCA AGGCAACAGG CAACCAGTTC AGAGTGGGGA CACTGTAGAC TCCATTGGCA R GCTCCTGACG TGTGTGACAC TGTGTAAATG TCCAGGGGAC ATGCCGATCC TCTTTCCCTG CCTACAGTCC TCTGGAGGGT GTTCTTGCTT GTCAGCAAGA TTTGAGGTAT CGGCTAACTG TAAAGCCCAG GTGGGGAGAA GTGGGACCCT ATGTGTTTTT TGGAATAGCT TTAAGCTAAC TTGGTTAGAG CCACTCTCTC R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss49239557 | NES12514973 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | G | A | G | G | G | G | G | G | G |
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs31443518 | SNP | G | G | G | G | G | G | A | G | G | G | G | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss49239557 | NES12514973 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr14:76130686 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm52138 | predicted gene, 52138 | within coordinates | ||||||
Gm62917 | predicted gene, 62917 | 1600 bp upstream | ||||||
Rr296309 | regulatory region 296309 | 764 bp distal | ||||||
Rr300347 | regulatory region 300347 | 143 bp distal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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