rs31443520 SNP Detail

Summary

• ID
  rs31443520
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:76130610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTAATCC AGTGGCTCCG
  TTTACTTGGG ACGAGTTTTC TCAAACACTT GGCAAATCAA GGTACAGCTG GGTTTCTCCT
  GTCACTGATG AATTTGTCAC ATAAATGCTT TACTCCAGGG CTACTTTTTC ATGGCTGTTC
  TTCCAATGAA CTTAATGCTA TGCCCAGGCG TGCTCTTCCC TTGGAAAGGG TGCTGTTTAT
  Y
  AACATTAAGC CTAGGCACTG TACCAAGGCA ACAGGCAACC AGTTCAGAGT GGGGACACTG
  TAGACTCCAT TGGCAGGCTC CTGACGTGTG TGACACTGTG TAAATGTCCA GGGGACATGC
  CGATCCTCTT TCCCTGCCTA CAGTCCTCTG GAGGGTGTTC TTGCTTGTCA GCAAGATTTG
  AGGTATCGGC TAACTGTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49239559	NES12514972	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31443520					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49239559	NES12514972	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:76130610 () rs orientation: forward

Symbol	Name	Function Class
Gm52138	predicted gene, 52138	within coordinates
Gm62917	predicted gene, 62917	1524 bp upstream
Rr296309	regulatory region 296309	688 bp distal
Rr300347	regulatory region 300347	67 bp distal