rs3144399 SNP Detail

Summary

• ID
  rs3144399
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118592759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAA CAGCAGGCCC AGCTGGGAGC
  R
  ACTCTGGGCC GAGCCATGCC TCTGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37652173	NES09027478	PERLEGEN	MM_PANEL2	f	SNP	G			G	G			A		A	G	G		G
ss45269202	mCV22541281	ABI	CRAMUS_MOUSE	f	SNP	G	G	G			A	G
ss147311974	ENSMUSSNP4458725	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
ss320471651	CHEV_2_118588014	CHEVERUD	SCREENING_POP	f	SNP									A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs3144399					SNP	G	G	G	G	G	A	G	A	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37652173	NES09027478	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118592759 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccdc9b	coiled-coil domain containing 9B			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr367276	regulatory region 367276			326 bp upstream
Rr563323	regulatory region 563323			894 bp distal
Rr563324	regulatory region 563324			772 bp distal
Rr563325	regulatory region 563325			96 bp proximal
Rr563326	regulatory region 563326			373 bp proximal
Rr563327	regulatory region 563327			1912 bp proximal
Tssr25793	transcription start site region 25793			329 bp downstream