rs3144400 SNP Detail

Summary

• ID
  rs3144400
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118594646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGA TAGGATGACC CAGCCCCCTG
  K
  AAGAGCTTCA GGAAGATATC CTGAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45359467	mCV22541315	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	T	G
ss147312014	ENSMUSSNP2771375	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		G
ss320471658	CHEV_2_118589901	CHEVERUD	SCREENING_POP	f	SNP						T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3144400					SNP	G	G	G	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118594646 () rs orientation: forward

Symbol	Name	Function Class
Ccdc9b	coiled-coil domain containing 9B	1504 bp upstream
Rr367276	regulatory region 367276	1378 bp downstream
Rr397216	regulatory region 397216	443 bp upstream
Rr563325	regulatory region 563325	1770 bp distal
Rr563326	regulatory region 563326	1014 bp distal
Rr563327	regulatory region 563327	25 bp proximal
Rr563328	regulatory region 563328	510 bp proximal
Rr563329	regulatory region 563329	1141 bp proximal
Tssr25793	transcription start site region 25793	1499 bp upstream