rs31444024 SNP Detail

Summary

• ID
  rs31444024
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:91179824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAG TGGAGAGCAT TAAGAGAGCC
  S
  GTGGGCAGCC ATGGCAGGTC TGAGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45034585	mCV25408069	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	C
ss144943460	ENSMUSSNP4456527	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss319839842	CHEV_1_93148679	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31444024					SNP	C	C	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:91179824 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi571	CpG island 571			1011 bp distal
Rr366958	regulatory region 366958			1856 bp downstream
Rr415587	regulatory region 415587			1526 bp distal
Rr415588	regulatory region 415588			403 bp distal
Rr415589	regulatory region 415589			within coordinates
Tssr8065	transcription start site region 8065			1886 bp downstream
Tssr8066	transcription start site region 8066			1792 bp downstream
Tssr8067	transcription start site region 8067			1722 bp downstream
Tssr8068	transcription start site region 8068			1594 bp downstream
Tssr8069	transcription start site region 8069			1516 bp downstream
Tssr12939	transcription start site region 12939			693 bp upstream
Ube2f	ubiquitin-conjugating enzyme E2F (putative)			Intron
				Noncoding-Transcript-Variant