rs3144403 SNP Detail

Summary

• ID
  rs3144403
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118595841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAG ACTGGTTGAC TGAGTATAGT
  R
  TTTGGCCCTT GGCCTACTCC TCAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45281243	mCV22541613	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss147312069	ENSMUSSNP3596593	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs3144403					SNP	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118595841 () rs orientation: forward

Symbol	Name	Function Class
Rr397216	regulatory region 397216	451 bp downstream
Rr563327	regulatory region 563327	424 bp distal
Rr563328	regulatory region 563328	664 bp distal
Rr563329	regulatory region 563329	within coordinates
Rr563330	regulatory region 563330	1131 bp proximal
Rr563331	regulatory region 563331	1471 bp proximal