rs31444176 SNP Detail

Summary

• ID
  rs31444176
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:70204545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGTGGAGA TAATGTTTTG
  AAAGGCTTTC CAGACTAGAA CAGTATAGAA ATCAGAATTC TTAGGAATGT GGGGGATACC
  TGTAGCACCC ACCCCCCCCA CACACACACC CTAAAGATAG GCTCACAAAG TCTATATAGA
  ATAGGGTAAG ATTCTAGGCA TGTGGGCATC TTAGATAAAG AGCAGGAACA GAAAGATGTC
  S
  GGAAACAGAA TTTGTCCATG AGAAGTGATT AAGACCAATG ACCCTAGAAT CAGTCTGCTC
  CGGTCCCAAT CCCGAACTAG CCATTTTTGG CTAAATGATT CTCTTGATCT CAGTGTACTC
  ACCTGTAAAG TGGAAATACT TATAGTCCCT GCCTCACACT GTTTAAATGA TATGTATATA
  TGTTATTTCA GGTAAAATGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39290444	mCV24339947	ABI	CRAMUS_MOUSE	f	SNP		C	G						G
ss51527935	NES14630759	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	G	G	G	C	G	G	C	C	G	G	C	G
ss139679380	ENSMUSSNP594769	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31444176					SNP	C	C	G	G	G	G	G	C	G	G	C	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51527935	NES14630759	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70204545 () rs orientation: forward

Symbol	Name	Function Class
Pebp4	phosphatidylethanolamine binding protein 4	within coordinates
Rr293348	regulatory region 293348	256 bp proximal
Rr293349	regulatory region 293349	1256 bp proximal
Rr293350	regulatory region 293350	1856 bp proximal
Rr300152	regulatory region 300152	746 bp distal
Rr389823	regulatory region 389823	448 bp downstream