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rs31444217 SNP Detail
Summary
  • ID
    rs31444217
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr14:76129664 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTTGTGAAGC CCTGGATTCA
    GTTCGGAGTA CTCCGGTCTG TAGTTTGGCA GCAGTTACCT GTAGTCTTGG TCACTCAGGA
    GGCTAAGGCA CAAGTTTGGC ATGAGCCTGG GTACTTAGGG CTGCCTAGGC AATACAGGAA
    GACTTTGTCT CAAACAGCAA ACAGAAGTAC CCTGGTTTTC TTTGCTGTCT GTGCCCAGTC
    R
    ACTACCCGGC ATCCATTTGT AACGCAAGCA TGTGCAACTG GAACTCACAC GTGGGAGTGT
    TTCATTTCAA CTTATTAAGC TTGCAAGCCA AGGCTTGCTC GGCTTTCTGA CGGATCTGTG
    TAGGTGGGTA ACAGAATGAG CTCAGAGCTG GCGGTTTGAT GCTGTTAAGG TTCCACCTGC
    CAACGCTGTC TGAGAATACT                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss49239567 NES12515006 PERLEGEN MM_PANEL2 f SNP G G G G G G A G G G G G G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs31444217 SNP G G G G G G A G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss49239567 NES12515006 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr14:76129664 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm52138 predicted gene, 52138 92 bp upstream
Gm62917 predicted gene, 62917 578 bp upstream
Rr296309 regulatory region 296309 within coordinates
Rr300347 regulatory region 300347 371 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory