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rs31444221 SNP Detail
Summary
  • ID
    rs31444221
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr14:76128434 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          AGATCAGGCT CATCTCCAAC TCAGAGATCC GTCTGCCTCT
    ATTCCTGCTT CCTAAGTGCT GGGATCAAAG GGTGTGTGCC GCTACACCCA TCTGTGATTC
    R
    TATTTTTTAG ACAACCTGAA TTCTTTTTCT TTCTCTCCCC TCACCCTGTA AGAACTAACT
    GAAAGAGCCT TGAGGAGGAC AGGACCAAGA AACCACTGTG                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
CAST/EiJ
FVB/NJ
MOLF/EiJ
NOD/ShiLtJ
ss49239571 NES12515058 PERLEGEN MM_PANEL2 f SNP G G A A A
SNP Consensus Information
SNP Consensus Type
A/J
CAST/EiJ
FVB/NJ
MOLF/EiJ
NOD/ShiLtJ
rs31444221 SNP G G A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss49239571 NES12515058 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr14:76128434 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm52138 predicted gene, 52138 1322 bp upstream
Gm62917 predicted gene, 62917 within coordinates
Rr296309 regulatory region 296309 1082 bp proximal
Rr300347 regulatory region 300347 1601 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory