rs31444757 SNP Detail

Summary

• ID
  rs31444757
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164268029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGTC AAGTACAAGC GTGGGGTAGT
  R
  GTCCTAACCA CAGTACTTCC CATTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45034389	mCV24721506	ABI	CRAMUS_MOUSE	f	SNP	A	A	A					A		G
ss60337232	NES15839926	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		G		G	A		G	G	A	G		G
ss145978673	ENSMUSSNP4067062	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							G
ss320086030	CHEV_1_166370591	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31444757					SNP	A	A	A	A	A	A	A	A	G	G	G	A	A	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60337232	NES15839926	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164268029 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	within coordinates
Tssr9784	transcription start site region 9784	1953 bp downstream
Tssr14741	transcription start site region 14741	1963 bp upstream
Tssr14742	transcription start site region 14742	1921 bp upstream
Tssr14743	transcription start site region 14743	1098 bp downstream
Tssr14744	transcription start site region 14744	1147 bp downstream