rs3144512 SNP Detail

Summary

• ID
  rs3144512
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118492666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGACA TAGGCCAACG GAGAAGAATG
  M
  TGATGTTTAC CAAGCTCTCG GATGG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45261891	mCV22536052	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	A
ss147308845	ENSMUSSNP1462276	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss320471119	CHEV_2_118487921	CHEVERUD	SCREENING_POP	f	SNP					C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3144512					SNP	A	A	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118492666 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12085	CpG island 12085	1035 bp proximal
Gm75659	predicted gene, 75659	within coordinates
Pak6	p21 (RAC1) activated kinase 6	1118 bp upstream
Rr373743	regulatory region 373743	1541 bp downstream
Tssr19565	transcription start site region 19565	1050 bp upstream
Tssr19566	transcription start site region 19566	1126 bp upstream
Tssr19567	transcription start site region 19567	1537 bp upstream