rs3144516 SNP Detail

Summary

• ID
  rs3144516
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118494573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAG GGTGTGTCAC AGTGCGTATG
  S
  GCCCAGCCAG ATCTGAGGAC AGCCG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37652431	NES09029010	PERLEGEN	MM_PANEL2	f	SNP			G	G	G	C	C		C	G	G	C		C	C	G	C		C
ss45211326	mCV22536099	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					C		G
ss147308900	ENSMUSSNP3122374	ENSEMBL	ENSEMBL_Sanger	f	SNP			G							G
ss320471131	CHEV_2_118489828	CHEVERUD	SCREENING_POP	f	SNP													C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3144516					SNP	G	G	G	G	G	C	C	C	C	G	G	C	C	C	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37652431	NES09029010	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118494573 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12085	CpG island 12085	539 bp distal
Gm75659	predicted gene, 75659	101 bp upstream
Pak6	p21 (RAC1) activated kinase 6	within coordinates
Rr55423	regulatory region 55423	within coordinates
Tssr19565	transcription start site region 19565	783 bp downstream
Tssr19566	transcription start site region 19566	764 bp downstream
Tssr19567	transcription start site region 19567	330 bp downstream