rs3144519 SNP Detail

Summary

• ID
  rs3144519
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118495005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAT CCAATGAGCA GGCTACAGGC
  Y
  GGGGCTCGGC TGGGGGCCAC CCTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45291977	mCV22536111	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss147308916	ENSMUSSNP1288310	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss320471134	CHEV_2_118490260	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3144519					SNP	T	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118495005 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12085	CpG island 12085	971 bp distal
Gm75659	predicted gene, 75659	533 bp upstream
Pak6	p21 (RAC1) activated kinase 6	within coordinates
Rr55423	regulatory region 55423	within coordinates
Tssr19565	transcription start site region 19565	1215 bp downstream
Tssr19566	transcription start site region 19566	1196 bp downstream
Tssr19567	transcription start site region 19567	762 bp downstream