rs3144520 SNP Detail

Summary

• ID
  rs3144520
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118495664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCA GACCAAGCGA GGGCCACCAG
  S
  ACTTCTTCCA AGAAGCCCTT CTCAC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37652425	NES09029016	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	G	G		G	G	G	C		C	G	G	C		G
ss45238392	mCV22536123	ABI	CRAMUS_MOUSE	f	SNP	G	G					C		G
ss147308935	ENSMUSSNP6648473	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320471137	CHEV_2_118490919	CHEVERUD	SCREENING_POP	f	SNP												C					G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3144520					SNP	G	G	G	G	G	G	C	G	G	G	C	C	C	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37652425	NES09029016	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118495664 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12085	CpG island 12085	1630 bp distal
Gm75659	predicted gene, 75659	1192 bp upstream
Pak6	p21 (RAC1) activated kinase 6	within coordinates
Rr55423	regulatory region 55423	63 bp distal
Tssr19565	transcription start site region 19565	1874 bp downstream
Tssr19566	transcription start site region 19566	1855 bp downstream
Tssr19567	transcription start site region 19567	1421 bp downstream