rs3144521 SNP Detail

Summary

• ID
  rs3144521
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118496013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTCA GAAAATGTTG CATTCCTTCC
  R
  GGGAGACAGG GGTGTCTTTC CCTAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45362238	mCV22536393	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss147308941	ENSMUSSNP5592334	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss320471138	CHEV_2_118491268	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3144521					SNP	A	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118496013 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12085	CpG island 12085	1979 bp distal
Gm75659	predicted gene, 75659	1541 bp upstream
Pak6	p21 (RAC1) activated kinase 6	within coordinates
Rr55423	regulatory region 55423	412 bp distal
Tssr19567	transcription start site region 19567	1770 bp downstream