rs3144522 SNP Detail

Summary

• ID
  rs3144522
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118496098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTTG GGAGCTCACC TAGTTAGGAT
  Y
  GGGGGTTGGT CTTTGGGTTA AGAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45286602	mCV22536394	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss147308946	ENSMUSSNP2826086	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss320471139	CHEV_2_118491353	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3144522					SNP	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118496098 () rs orientation: forward

Symbol	Name	Function Class
Gm75659	predicted gene, 75659	1626 bp upstream
Pak6	p21 (RAC1) activated kinase 6	within coordinates
Rr55423	regulatory region 55423	497 bp distal
Tssr19567	transcription start site region 19567	1855 bp downstream