rs31445924 SNP Detail

Summary

• ID
  rs31445924
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30252984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGCTTCACT GTGCCCTGCT GCGATCGCCC CCTACTATCT
  GCGCGCCCCC AGTGTGGCGT TACCCACAGC CCAGGTGCCA GGCCTAGGGA GAGGGCCAAT
  Y
  CAACTACTAA CAAGACTGGG GGCCAGGAGG GGGGTCTAAC CCCGGGCCGG GGGTGCGGGA
  ATGTCTGTTG ATTTTTAACT TAGAGGAGAA TGTCACCCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss46033457	mCV25394905	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss148682318	ENSMUSSNP2094183	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss322135214	CHEV_7_31338578	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs31445924					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30252984 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18808	CpG island 18808	908 bp distal
Cpgi18809	CpG island 18809	25 bp distal
Cpgi18810	CpG island 18810	667 bp proximal
Hspb6	heat shock protein, alpha-crystallin-related, B6	within coordinates
Lin37	lin-37 DREAM MuvB core complex component	1882 bp downstream
Mir9769	microRNA 9769	655 bp downstream
Proser3	proline and serine rich 3	1260 bp upstream
Rr400242	regulatory region 400242	1067 bp downstream
Tssr65779	transcription start site region 65779	995 bp downstream
Tssr65780	transcription start site region 65780	287 bp downstream
Tssr65781	transcription start site region 65781	250 bp downstream
Tssr65782	transcription start site region 65782	1213 bp upstream
Tssr65783	transcription start site region 65783	1288 bp upstream
Tssr65784	transcription start site region 65784	1312 bp upstream
Tssr65785	transcription start site region 65785	1364 bp upstream
Tssr65786	transcription start site region 65786	1382 bp upstream
Tssr65787	transcription start site region 65787	1476 bp upstream
Tssr71787	transcription start site region 71787	1243 bp upstream
Tssr71788	transcription start site region 71788	1184 bp upstream
Tssr71789	transcription start site region 71789	1106 bp downstream
Tssr71790	transcription start site region 71790	1218 bp downstream