rs3144611 SNP Detail

Summary

• ID
  rs3144611
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118531397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAA GCTGGAAGCT GGGCTGGGCC
  W
  GCATCCCACG CGGTGGGGCC CAGGC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147310128	ENSMUSSNP5775482	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss320471363	CHEV_2_118526652	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs3144611					SNP	T	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118531397 () rs orientation: forward

Symbol	Name	Function Class
Ankrd63	ankyrin repeat domain 63	within coordinates
Cpgi12088	CpG island 12088	351 bp distal
Cpgi12089	CpG island 12089	1286 bp proximal
Rr397213	regulatory region 397213	488 bp downstream
Rr563303	regulatory region 563303	581 bp distal
Rr563304	regulatory region 563304	within coordinates
Rr563305	regulatory region 563305	1861 bp proximal