rs3144612 SNP Detail

Summary

• ID
  rs3144612
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118532217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTC CAAAAAGCTT ACGTGGCCAC
  S
  TTAGTTCCTC CTTTCTTCCA ACACT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37652305	NES09028403	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C		C	C		G	C	C
ss45379207	mCV22538172	ABI	CRAMUS_MOUSE	f	SNP	C					G		C
ss147310133	ENSMUSSNP2097916	ENSEMBL	ENSEMBL_Sanger	f	SNP	C							C
ss320471364	CHEV_2_118527472	CHEVERUD	SCREENING_POP	f	SNP									G				C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs3144612					SNP	C	C	C	C	C	G	C	C	G	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37652305	NES09028403	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118532217 () rs orientation: forward

Symbol	Name	Function Class
Ankrd63	ankyrin repeat domain 63	within coordinates
Cpgi12088	CpG island 12088	1171 bp distal
Cpgi12089	CpG island 12089	466 bp proximal
Rr397213	regulatory region 397213	1308 bp downstream
Rr563303	regulatory region 563303	1401 bp distal
Rr563304	regulatory region 563304	769 bp distal
Rr563305	regulatory region 563305	1041 bp proximal
Rr563306	regulatory region 563306	1728 bp proximal