rs3144617 SNP Detail

Summary

• ID
  rs3144617
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118532891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCG ACCAGGCTGG GGATGTCTGG
  R
  GCTGTGGACC GTCGGCGCAA ACCCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45356011	mCV22538185	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss147310163	ENSMUSSNP7061176	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss320471370	CHEV_2_118528146	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3144617					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118532891 () rs orientation: forward

Symbol	Name	Function Class
Ankrd63	ankyrin repeat domain 63	within coordinates
Cpgi12088	CpG island 12088	1845 bp distal
Cpgi12089	CpG island 12089	within coordinates
Rr397213	regulatory region 397213	1982 bp downstream
Rr563304	regulatory region 563304	1443 bp distal
Rr563305	regulatory region 563305	367 bp proximal
Rr563306	regulatory region 563306	1054 bp proximal
Rr563307	regulatory region 563307	1543 bp proximal