rs3144648 SNP Detail

Summary

• ID
  rs3144648
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118376665 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGAGA AATATGCCCT CCTCTGGCAA
  R
  AGGGCAGGAT TAGACACTCG GTCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45228278	mCV23829018	ABI	CRAMUS_MOUSE	r	SNP	T	T	C	T
ss147304444	ENSMUSSNP2470480	ENSEMBL	ENSEMBL_Sanger	r	SNP		T		T
ss320470272	CHEV_2_118371920	CHEVERUD	SCREENING_POP	r	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3144648					SNP	A	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118376665 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bmf	BCL2 modifying factor			Intron
				Noncoding-Transcript-Variant
Cpgi12082	CpG island 12082			1499 bp distal
Rr397207	regulatory region 397207			122 bp downstream
Rr397208	regulatory region 397208			319 bp upstream
Rr563263	regulatory region 563263			within coordinates
Rr563264	regulatory region 563264			833 bp proximal
Rr563265	regulatory region 563265			1365 bp proximal
Tssr19559	transcription start site region 19559			559 bp upstream
Tssr25777	transcription start site region 25777			1015 bp upstream
Tssr25778	transcription start site region 25778			840 bp upstream
Tssr25779	transcription start site region 25779			834 bp downstream
Tssr25780	transcription start site region 25780			1357 bp downstream