rs3144649 SNP Detail

Summary

• ID
  rs3144649
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118375295 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTGTA GTCTGGTTTG ACAAACTCTC
  Y
  GGACCCAAGT GAAGGGCTTG CCTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147304441	ENSMUSSNP521978	ENSEMBL	ENSEMBL_Sanger	r	SNP	G	G
ss320470271	CHEV_2_118370550	CHEVERUD	SCREENING_POP	r	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs3144649					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118375295 () rs orientation: reverse

Symbol	Name	Function Class
Bmf	BCL2 modifying factor	within coordinates
Cpgi12082	CpG island 12082	129 bp distal
Rr397207	regulatory region 397207	948 bp upstream
Rr397208	regulatory region 397208	1689 bp upstream
Rr563262	regulatory region 563262	1470 bp distal
Rr563263	regulatory region 563263	1370 bp proximal
Tssr19559	transcription start site region 19559	1929 bp upstream
Tssr25777	transcription start site region 25777	348 bp downstream
Tssr25778	transcription start site region 25778	496 bp downstream