rs3144650 SNP Detail

Summary

• ID
  rs3144650
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118374215 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TCCCT CCCAGTCCAT GTTTGGACAC
  Y
  TTCTGATTCT TTCCTGCACA TTTAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45267041	mCV23829008	ABI	CRAMUS_MOUSE	r	SNP	G	G	A	G
ss147304399	ENSMUSSNP6828046	ENSEMBL	ENSEMBL_Sanger	r	SNP		G
ss320470268	CHEV_2_118369470	CHEVERUD	SCREENING_POP	r	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3144650					SNP	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118374215 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bmf	BCL2 modifying factor			Intron
				Noncoding-Transcript-Variant
Cpgi12082	CpG island 12082			650 bp proximal
Rr563262	regulatory region 563262			390 bp distal
Tssr25777	transcription start site region 25777			1428 bp downstream
Tssr25778	transcription start site region 25778			1576 bp downstream