rs31446786 SNP Detail

Summary

• ID
  rs31446786
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:138799145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAATTAGAT TTGGCCCCAG ATCACTACCT AAGGAAGGAA
  GCTGTAGGGC AGAGGGGAGA AGCAGAAAGA GTTGGCAGGC AGCCAAGGAA GCGGTCCATG
  Y
  AGGAGACTTG GCCAAGCTGA CCTCAGCAGG ACCTCAGGGG AATCTCAGAG CTATTAGGAT
  TGGCATCGTG AGGCCAGAAA ACAAGAGTCA TCCAGAAGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46034287	mCV23696899	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss145976068	ENSMUSSNP3249476	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss322467790	CHEV_7_146405128	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31446786					SNP	T	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:138799145 () rs orientation: forward

Symbol	Name	Function Class
Lrrc27	leucine rich repeat containing 27	within coordinates
Rr657518	regulatory region 657518	within coordinates
Rr657519	regulatory region 657519	1000 bp proximal
Tssr69706	transcription start site region 69706	1345 bp upstream