rs31447159 SNP Detail

Summary

• ID
  rs31447159
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180865821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCGG CGAGAAATGA CAAACAAATA
  Y
  GAACACAAGG GAGTGTGCTG TATCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45034821	mCV24573240	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
ss320160851	CHEV_1_182968387	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31447159					SNP	T	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180865821 () rs orientation: forward

Symbol	Name	Function Class
Rr372545	regulatory region 372545	1871 bp downstream
Rr424676	regulatory region 424676	291 bp distal
Rr424677	regulatory region 424677	1237 bp proximal
Rr424678	regulatory region 424678	1507 bp proximal
Rr424679	regulatory region 424679	1787 bp proximal