rs3144717 SNP Detail

Summary

• ID
  rs3144717
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118415274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAGG GGCCCCGGGG ATACGGGAAG
  W
  GGGAGAGAGG TTCCCAGGAA GGCAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss46418811	mCV22885688	ABI	CRAMUS_MOUSE	r	SNP	A	T	A
ss147305563	ENSMUSSNP2221541	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss320470510	CHEV_2_118410529	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3144717					SNP	T	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118415274 () rs orientation: forward

Symbol	Name	Function Class
Rr563272	regulatory region 563272	1261 bp proximal