rs3144733 SNP Detail

Summary

• ID
  rs3144733
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118427084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATAA TGGTGGAAAT AGAGAGGTGG
  R
  AATCTACCAC AGACACACAC CTCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45242814	mCV22534335	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss320470597	CHEV_2_118422339	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs3144733					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118427084 () rs orientation: forward

Symbol	Name	Function Class
Bub1b	BUB1B, mitotic checkpoint serine/threonine kinase	1608 bp upstream
Cpgi12084	CpG island 12084	1422 bp proximal
Rr397211	regulatory region 397211	1434 bp upstream
Rr563273	regulatory region 563273	1118 bp proximal
Rr563274	regulatory region 563274	1619 bp proximal
Tssr19562	transcription start site region 19562	1606 bp upstream
Tssr19563	transcription start site region 19563	1629 bp upstream
Tssr19564	transcription start site region 19564	1668 bp upstream