rs31447842 SNP Detail

Summary

• ID
  rs31447842
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9467439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTG TGCTTGGCCC TCTCTGCTGG
  Y
  TAGTTATTGT TGACTAACCC TCTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45536027	mCV23607700	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss134574449	ENSMUSSNP746866	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
ss320650891	CHEV_3_9402379	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31447842					SNP	C	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9467439 () rs orientation: forward

Symbol	Name	Function Class
C030034L19Rik	RIKEN cDNA C030034L19 gene	641 bp upstream
Gm55345	predicted gene, 55345	within coordinates
Tssr28343	transcription start site region 28343	615 bp upstream
Tssr28344	transcription start site region 28344	670 bp upstream
Tssr28345	transcription start site region 28345	732 bp upstream