rs31449689 SNP Detail

Summary

• ID
  rs31449689
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:157269301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCTGAACTT GGCTTTTATT CTCACACTTC ATATTTAATC
  TATCCGAGAT CTGGTTGGCC CTGTTTTCAA AATCTATCCC CAGGGAGGGG GATATGTTTA
  Y
  ACTAAGGATT CATCTCTAGT GCTGTTTTTG TTTTTGTTTT TGTTTTCCTT ACAGGGTATT
  TTCTTCACAG CAGCCAGGGT GATTCTGTTA AAACGTGAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45035026	mCV22694006	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs31449689					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:157269301 () rs orientation: forward

Symbol	Name	Function Class
Gm70539	predicted gene, 70539	within coordinates
Gm71050	predicted gene, 71050	1170 bp upstream
Rr421381	regulatory region 421381	1181 bp distal
Rr421382	regulatory region 421382	1097 bp distal
Rr421383	regulatory region 421383	761 bp distal
Rr421384	regulatory region 421384	1216 bp proximal
Tssr9590	transcription start site region 9590	1075 bp downstream