rs31452054 SNP Detail

Summary

• ID
  rs31452054
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:63566398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATATTACAA ATCCAGTTTC CACTTCCTCT CCCTAAATGG
  GTGGCAGAAG CATTTCCCAA GGGGTCTAGT ATTCCCCAAG ATGAAGTAAC AGAGCTGTGG
  Y
  CCTGAAGAGA GGCAGAGTGC AGGAAAAGTC CTATGAAGAG GAGCAACAGG CAGACCCAAG
  AAGACACAGA ATCTAACCCT ACCCCCATCA TCTATGCCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46034346	mCV25343636	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		C
ss48254225	NES11790990	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		T	C	T	C	C	T	C	T
ss144834791	ENSMUSSNP1267022	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31452054					SNP	T	C	T	T	T	T	T	T	T	C	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48254225	NES11790990	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:63566398 () rs orientation: forward

Symbol	Name	Function Class
E030018B13Rik	RIKEN cDNA E030018B13 gene	207 bp upstream
Gm53391	predicted gene, 53391	within coordinates
Klf13	Kruppel-like transcription factor 13	Intron
Rr647715	regulatory region 647715	within coordinates
Rr647716	regulatory region 647716	839 bp proximal
Tssr66988	transcription start site region 66988	230 bp upstream
Tssr66989	transcription start site region 66989	591 bp upstream