rs31452614 SNP Detail

Summary

• ID
  rs31452614
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:167760129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCTTAAGCC GTCACATATC TGATTTTTGG ATTGTCATTT
  CCAATTGAGA CTCGAGTTTC TCCTGAGGGC ACAGCAGAGC GTGCAAGAGG TCACTCCAAA
  R
  TTCACAAAAT CTCTTTGCCA TCGTGCCTAC TGTGATGGTT TGTATATGCT TGGTCCAGGG
  AGTGGCACTA CTAGGAGGAG AGGTCTTGTT GGAGTAGAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49739795	NES13034054	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A		G	G	G	G	A	G
ss146052778	ENSMUSSNP2526820	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31452614					SNP	G	G	G	G	G	G	A	A	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49739795	NES13034054	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:167760129 () rs orientation: forward

Symbol	Name	Function Class
Rr422779	regulatory region 422779	1985 bp distal
Rr422780	regulatory region 422780	173 bp distal
Rr422781	regulatory region 422781	273 bp distal