rs31452621 SNP Detail

Summary

• ID
  rs31452621
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:167759622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATGTTAAA AAGGTTGAAA
  CATAGCCTCA TCAACTTGTT CCTCAGTATA TCTGTAGATG CCTCCTTTGG ACATAATTTT
  TATTTTGCTG ATTAACTTTT GAATGAGGAA CCAAATTAAA CATTAAAAAA ACAAAGCACA
  GTGAATTGGT CTGAGGGGGG GATGGGAAAA ATGGGAAAAG GGACCCCACA AAACAGAGCA
  Y
  AGCATGTATG ACCTCCACCT GCAAAGTGTG CAGTCTTAGT TGATGCTGCT GCAGCCAAGT
  AAAATCAGTT GCCTCCATCT GCTTCAGGGA GGCAGCCCCT TTGGTGATGC CTGTAGCCTG
  CAGCCCCTCA GAGCCTTCAA GATATCTTTC TAGAGGGAAA GACTGAGATG TCTCCCCAGA
  CCTAAGGGAA AAGGTTTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss49739802	NES13034046	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs31452621					SNP	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49739802	NES13034046	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:167759622 () rs orientation: forward

Symbol	Name	Function Class
Cpgi987	CpG island 987	1958 bp distal
Rr422779	regulatory region 422779	1478 bp distal
Rr422780	regulatory region 422780	90 bp proximal
Rr422781	regulatory region 422781	213 bp proximal