rs31453678 SNP Detail

Summary

• ID
  rs31453678
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:181942510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTT GCCCTGCCCC AGTCCCAATA
  Y
  GATCTTGAGG CAGCAGGACA GGGAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45035389	mCV24017143	ABI	CRAMUS_MOUSE	f	SNP		C	T					C
ss49538229	NES12844446	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C	C	C		C	T	T	T	C	T	C	C	C
ss146402216	ENSMUSSNP66055	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31453678					SNP	C	C	T	T	C	C	C	C	C	T	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49538229	NES12844446	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181942510 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1142	CpG island 1142	1562 bp distal
Gm33725	predicted gene, 33725	within coordinates
Gm39719	predicted gene, 39719	1304 bp downstream
Rr424860	regulatory region 424860	905 bp distal
Rr424861	regulatory region 424861	404 bp distal
Rr424862	regulatory region 424862	200 bp proximal
Rr424863	regulatory region 424863	464 bp proximal
Rr424864	regulatory region 424864	848 bp proximal
Rr424865	regulatory region 424865	942 bp proximal