rs31453799 SNP Detail

Summary

• ID
  rs31453799
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30731886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCTGCTC AGAGCCCATC
  CCCGAGCCCC ACAGCCTCCC TGGTGGACAT GCCCTAAGCA AGCAGTCCTC CTGAAGCCCA
  ACTTGTGGGT TGTTGCAGGA GACAGAGCTT GAGAGTGTGG GCTGCATTTT CACAGCTATG
  CATGAGGTAT CCTGAGGGGC AGAGTGACTG GCCATGTGAA GATAAAGGGG TGACTGCACC
  R
  GGGTCCCCAC ATCATGCTTA CTCATGCTCT GATCGATACC AAGGTATGCT GTAAGCCAGG
  CTCCTGGACA GAGGTCCTGT CTCTTAATCG TGACAGACCC TAAACACACC CTCCTTCCGT
  GAACACACCA GGCCTCCCCT TATCCCCCAT CATATTGTCC TGTTGTCTGA GTGTGTAACA
  ACCATACCCT ACTCCCTAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
ss46034236	mCV22838246	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss148696754	ENSMUSSNP3018110	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
ss322138563	CHEV_7_31817480	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
rs31453799					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30731886 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	267 bp downstream
Rr644976	regulatory region 644976	1523 bp distal
Rr644977	regulatory region 644977	321 bp distal
Rr644978	regulatory region 644978	1032 bp proximal
Tssr65829	transcription start site region 65829	392 bp upstream