rs31454029 SNP Detail

Summary

• ID
  rs31454029
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:76899902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATTTTATT GAGACAAGGT
  GGGTCAACGG GAAGCTGAGC AGTGGGAGAC TTGATGCTCA CCGCCCCGTT TTCACCCTCC
  ACTCCCTCTA AGCAACCCTC CATCTCGCCC AAAGGTCAGG GTCTGCTAGT CAGTGACTTG
  GATTTGGGGT CAAATGTGAC AGTGGAAAAG AGATTTTCCC AAAACCAGAA GAAAATGGAC
  Y
  GGGACTTAGG AGACCTGAGC ATGACCCGGC AGAGCTGACG AAGGCCACTT TGCACCTCTG
  GGCTCCAGGG TAACACTGCC CAGAGCCCTG TCCCCAGGGG TGTGGGTGGA TGCCACACTA
  TGCTCCCCTC TTCTGTTCTC TGCTAACCTA GAACACTGCA CACGCTACTT GCTACACAAC
  ACTGGGTCCC AGCTTGGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48053829	NES12082215	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31454029					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48053829	NES12082215	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76899902 () rs orientation: forward

Symbol	Name	Function Class
Gm49540	predicted gene, 49540	within coordinates
Gm52199	predicted gene, 52199	642 bp upstream
Mb	myoglobin	mRNA-UTR
Rr504916	regulatory region 504916	1809 bp distal
Rr504917	regulatory region 504917	1308 bp distal
Rr504918	regulatory region 504918	216 bp distal
Tssr131853	transcription start site region 131853	76 bp upstream
Tssr131854	transcription start site region 131854	111 bp upstream
Tssr131855	transcription start site region 131855	219 bp upstream
Tssr131856	transcription start site region 131856	310 bp upstream
Tssr131857	transcription start site region 131857	1929 bp upstream
Tssr135064	transcription start site region 135064	357 bp downstream
Tssr135065	transcription start site region 135065	1942 bp downstream