rs31454031 SNP Detail

Summary

• ID
  rs31454031
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:76900029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCAGTGAC TTGGATTTGG
  GGTCAAATGT GACAGTGGAA AAGAGATTTT CCCAAAACCA GAAGAAAATG GACTGGGACT
  TAGGAGACCT GAGCATGACC CGGCAGAGCT GACGAAGGCC ACTTTGCACC TCTGGGCTCC
  AGGGTAACAC TGCCCAGAGC CCTGTCCCCA GGGGTGTGGG TGGATGCCAC ACTATGCTCC
  Y
  CTCTTCTGTT CTCTGCTAAC CTAGAACACT GCACACGCTA CTTGCTACAC AACACTGGGT
  CCCAGCTTGG TGGGCTGGAC AGTGGGAGCC CATGGCTCAG CCCTGGAAGC CTAGCTCCTT
  GTACTTGGCG GCAATGTCAT TCCGGAAGAG CTCCAGGGCC TTGCTCATGG CGCCCTGAGC
  ATCTGCTCCA AAGTCCCCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48053831	NES12082216	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31454031					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48053831	NES12082216	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76900029 () rs orientation: forward

Symbol	Name	Function Class
Gm49540	predicted gene, 49540	within coordinates
Gm52199	predicted gene, 52199	769 bp upstream
Mb	myoglobin	mRNA-UTR
Rr504916	regulatory region 504916	1936 bp distal
Rr504917	regulatory region 504917	1435 bp distal
Rr504918	regulatory region 504918	343 bp distal
Tssr131853	transcription start site region 131853	42 bp downstream
Tssr131854	transcription start site region 131854	within coordinates
Tssr131855	transcription start site region 131855	92 bp upstream
Tssr131856	transcription start site region 131856	183 bp upstream
Tssr131857	transcription start site region 131857	1802 bp upstream
Tssr131858	transcription start site region 131858	1878 bp upstream
Tssr135064	transcription start site region 135064	230 bp downstream
Tssr135065	transcription start site region 135065	1815 bp downstream