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rs31454453 SNP Detail
Summary
  • ID
    rs31454453
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr15:76962116 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGTGTCCCTA ATGGTGAGAA
    ACAAGCTTCC ACTGGCAGCT ACTCAGTTTA TGGTACAGAC TGTTGTTGGA TTTAGTGACA
    TTTTGAGATG TACTTAGGGC CAGAAATACA CCAGGCAGAC AGGATCTGGG CTGCCTGATT
    GGCCTCTGCC ATTTCCCACG TGGCTTAGGA CAAGATCCAT GACTCAATTT CAGCGCTCAG
    Y
    GAGAAGACAT GGCCAGGCTC AGTTTCTGTC TCCTCGGAAA TGAACACACT ATCCTGTCAC
    TGTGTCACGG ATGTACAAAC ACAGCCCGGG TCAGAGTCAA AGGCCTTTAG TGGCAGTGGC
    AGTGTGGGTG GTAAGAGAAT CAGCACAGGG GACACTCCAG TGAGCCGCAG CTCTCCAGGC
    ATGTGTTGCT GCTGTGTGTT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
ss48054233 NES12079552 PERLEGEN MM_PANEL2 f SNP T T T T T T C T T T T T T C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
rs31454453 SNP T T T T T T C T T T T T T C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss48054233 NES12079552 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr15:76962116 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm53899 predicted gene, 53899 within coordinates
Rbfox2 RNA binding protein, fox-1 homolog (C. elegans) 2 1074 bp downstream
Rr504938 regulatory region 504938 within coordinates
Rr504939 regulatory region 504939 1639 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory