rs31454849 SNP Detail

Summary

• ID
  rs31454849
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:13010978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAATCAATT CTCCCCTGTC
  TTTTGGCTTG TTTCAGTATG CCTCTCACTC TCTACAATGG CCTCTACTAA ACCCTGTATA
  TCAAGTCTGG GTTGTTTTGT ATTGAGTCTT ATTTATTTCC TGGCTCAGAC TCCATCTCAG
  TAAGTATCCT TCCTTGAATC TGTCCTGCCT GGCTTTTCTG TACTTGGCAG AATCAGTGGG
  Y
  TTCTCTCCCT GGTATTAAAC CTGTGGGTTG GAAGCTGTTT GGCTCACCCC TTGCTCCCCT
  CCCCCTGTAG GGTCACAGCT CAGGCTCACG CACCACGCTG TGGACTTGTT GGGCATGCGC
  ACATCCTTGC ACACCAGCAG CACGTAGCTG TACTTGAGCA CGTGGATAAG CCTGTAGAGT
  GGGGGCGTGT TGGCCCAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46034246	mCV22927754	ABI	CRAMUS_MOUSE	f	SNP		C	T					C		C
ss60970720	NES16158016	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	C		C	C	C	C		C	C	T	C		C
ss148344310	ENSMUSSNP7068109	ENSEMBL	ENSEMBL_Sanger	f	SNP			T							C
ss322107468	CHEV_7_13862401	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31454849					SNP	C	C	T	T	T	C	C	C	C	C	C	C	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60970720	NES16158016	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:13010978 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18339	CpG island 18339	1265 bp proximal
Lig1	ligase I, DNA, ATP-dependent	261 bp upstream
Rr400108	regulatory region 400108	1589 bp upstream
Rr642459	regulatory region 642459	647 bp proximal
Rr642460	regulatory region 642460	1082 bp proximal
Rr642461	regulatory region 642461	1374 bp proximal
Rr642462	regulatory region 642462	1621 bp proximal
Rr642463	regulatory region 642463	1775 bp proximal
Tssr64537	transcription start site region 64537	103 bp upstream
Tssr64538	transcription start site region 64538	202 bp upstream
Tssr64539	transcription start site region 64539	1492 bp upstream
Tssr64540	transcription start site region 64540	1726 bp upstream
Tssr64541	transcription start site region 64541	1824 bp upstream
Tssr70659	transcription start site region 70659	1609 bp downstream
Zswim9	zinc finger SWIM-type containing 9	within coordinates