rs31455004 SNP Detail

Summary

• ID
  rs31455004
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:76900647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCC GGCCCATGAT ACCTTGCTCA
  R
  CATCGGCTAG CCCACCAGGA CTGTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48053835	NES12082147	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31455004					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48053835	NES12082147	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76900647 () rs orientation: forward

Symbol	Name	Function Class
Gm49540	predicted gene, 49540	549 bp downstream
Gm52199	predicted gene, 52199	1387 bp upstream
Mb	myoglobin	Intron
Rr504918	regulatory region 504918	961 bp distal
Tssr131853	transcription start site region 131853	660 bp downstream
Tssr131854	transcription start site region 131854	609 bp downstream
Tssr131855	transcription start site region 131855	491 bp downstream
Tssr131856	transcription start site region 131856	411 bp downstream
Tssr131857	transcription start site region 131857	1184 bp upstream
Tssr131858	transcription start site region 131858	1260 bp upstream
Tssr135064	transcription start site region 135064	369 bp upstream
Tssr135065	transcription start site region 135065	1197 bp downstream