rs31455006 SNP Detail

Summary

• ID
  rs31455006
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:76900693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCAAAGAC AGGTATAGCT
  GTGTGCATGA AGTCATGCAG TCAGGGAGGG TCACTCAAAC TCAGGGAGCC CCTCTGGGGC
  CCCTTTCTCA CCTCTCGTGT GCCCACACTA CTTCAGGATG CAGGCCCAGC AGCCGGCCCA
  TGATACCTTG CTCAGCATCG GCTAGCCCAC CAGGACTGTC AATCAGGACA CTTGGGAGGA
  R
  GCTTTTCCCA TCATGTGATT TTATCCCTAA ACCTGGGACT GAGGAACAGG TACTAACAAG
  GGGAGAGGGG CCAGGGGAGA TCAGGTACCG ACATTGCCTA GATGGGGATC GGGACCACCC
  AGAATCCAAA GGCTCACGAT GAAACTATCA TAACACTTAC TTATCGTCAT TGACTTAGAG
  TTTGGTCCCG TACAGCTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48053837	NES12082148	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31455006					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48053837	NES12082148	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76900693 () rs orientation: forward

Symbol	Name	Function Class
Gm49540	predicted gene, 49540	595 bp downstream
Gm52199	predicted gene, 52199	1433 bp upstream
Mb	myoglobin	Intron
Rr504918	regulatory region 504918	1007 bp distal
Tssr131853	transcription start site region 131853	706 bp downstream
Tssr131854	transcription start site region 131854	655 bp downstream
Tssr131855	transcription start site region 131855	537 bp downstream
Tssr131856	transcription start site region 131856	457 bp downstream
Tssr131857	transcription start site region 131857	1138 bp upstream
Tssr131858	transcription start site region 131858	1214 bp upstream
Tssr135064	transcription start site region 135064	415 bp upstream
Tssr135065	transcription start site region 135065	1151 bp downstream