rs31455010 SNP Detail

Summary

• ID
  rs31455010
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:76900830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATGATACC TTGCTCAGCA
  TCGGCTAGCC CACCAGGACT GTCAATCAGG ACACTTGGGA GGAGGCTTTT CCCATCATGT
  GATTTTATCC CTAAACCTGG GACTGAGGAA CAGGTACTAA CAAGGGGAGA GGGGCCAGGG
  GAGATCAGGT ACCGACATTG CCTAGATGGG GATCGGGACC ACCCAGAATC CAAAGGCTCA
  Y
  GATGAAACTA TCATAACACT TACTTATCGT CATTGACTTA GAGTTTGGTC CCGTACAGCT
  TTGGCTGCTG TACTGAAGAG ACTACCAAGT GACCAGGCTG AGGTCATGTA GCAGGTAGAT
  AGTAAGCTGA GATTAGACCC AGGGACTGTG GACACACCCC TGCTAGCTCA GGAGTGGGGG
  TACAGCTGCT GTTTTGGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48053841	NES12082150	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31455010					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48053841	NES12082150	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76900830 () rs orientation: forward

Symbol	Name	Function Class
Gm49540	predicted gene, 49540	732 bp downstream
Gm52199	predicted gene, 52199	1570 bp upstream
Mb	myoglobin	Intron
Rr504918	regulatory region 504918	1144 bp distal
Tssr131853	transcription start site region 131853	843 bp downstream
Tssr131854	transcription start site region 131854	792 bp downstream
Tssr131855	transcription start site region 131855	674 bp downstream
Tssr131856	transcription start site region 131856	594 bp downstream
Tssr131857	transcription start site region 131857	1001 bp upstream
Tssr131858	transcription start site region 131858	1077 bp upstream
Tssr135064	transcription start site region 135064	552 bp upstream
Tssr135065	transcription start site region 135065	1014 bp downstream