rs31455385 SNP Detail

Summary

• ID
  rs31455385
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:76962560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGAGGTC ACTGTGCGGG
  ACAGCACCTG GGACTGACCT GCTGCGCTCA CATCATGGCT GATTCCTCAT CCGGAAGACT
  GGGTGGCAGG AGAGTGAAGG GCAAGCAGAG GCAGAGGGTA GCAGCTTTGT CTAGGTTGCC
  ATGGAGAAGA GAGCTTGGGA TTTTAGTGGG AGAAAAAAAT TAAAAAATTT AAGATCGAAA
  R
  CCTTGGTCAG GAAAAGGGAA GAGAGGGGAC AGGAAACCCT TAGCTGATGA AATGGGAAGG
  TTAGGTGCAG AGCACGGGGA TGGGGTGGGG TGTGGGGTAC CTCACCTGAG AGCTGAAGAC
  CATTAGGGCA GGTAAGGAGA AGGAAGACGC CAAGGTTACA TATCTGGCAG CAGAAATCCA
  CTTGGGAGTC TGGGAGGATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48054235	NES12079474	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31455385					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48054235	NES12079474	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76962560 () rs orientation: forward

Symbol	Name	Function Class
Gm53899	predicted gene, 53899	within coordinates
Rbfox2	RNA binding protein, fox-1 homolog (C. elegans) 2	630 bp downstream
Rr504938	regulatory region 504938	87 bp distal
Rr504939	regulatory region 504939	1195 bp proximal