rs31455389 SNP Detail

Summary

• ID
  rs31455389
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:76964817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAAAGGA GGTACACAGG
  AGAGGGGATG GGTGGGAAGA GGCTTCCGGA CAGCAACATT TCCAAAAATA TAGTGTTTTA
  TGAAACAGAG AATCAAGTGT CACTGGTGTA TACTACAAAT GATCAGACAT TCTCAAGAGC
  ATGACAAAAG AAAACACACG TTTACATTAG ATGTTCACCG TGCCCACTAT TGTTTCCTAT
  Y
  TGAAAACAGT GCAAACAGGT AACTTATGCT TTAAACACCA AGACCCCTTC CCCACCCCCC
  AAAGTCCCTT TCCTCCTAAT ATCTGGGAGA AAAGTCTGCA ATTTTGCAAA CATTGCCATG
  CTAGAGGTTT GAGTAGTGGA GAACTGGCTG GGCCAGAGGG GAAGGTTGGC CAGGCAGCTT
  CCCGCCCCCT CCCCCCCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48054239	NES12079480	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31455389					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48054239	NES12079480	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76964817 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm53899	predicted gene, 53899			within coordinates
Rbfox2	RNA binding protein, fox-1 homolog (C. elegans) 2			mRNA-UTR
				Noncoding-Transcript-Variant
Rr504939	regulatory region 504939			390 bp distal
Rr504940	regulatory region 504940			99 bp proximal
Rr504941	regulatory region 504941			820 bp proximal
Rr504942	regulatory region 504942			929 bp proximal