rs31455393 SNP Detail

Summary

• ID
  rs31455393
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:76966083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGATGCAC TGGCAAACAG
  ACTGGCCTTG GAGGCCTCAG CCAGAACCAG CTGAACTGAA GTGCATGAAG GCCCCTCAGG
  CCCTGCAGCA TGGGCCATGG GACTGTCCTC TTCACCCTGC GTGGCCACCC TTTCCTGTCT
  AGGAAAGAAG AAGCCTTCTT CAACTCTCTC TCCCTTCCTA CCATCTGTGG ATACAACTGT
  Y
  GAGAGACTGG CCTCGTCTCC ACTAGGTGAA GGGCTTGCCT TTCTGTGAGA ATGGCCCTTA
  TTAAACAAAG ACCCAAAATG TCTGTTCCTT TAGCCAGTAA ATTTTCTCAA AAAGAAACAA
  GAGAAAGAAA AACCCCTCTG CCCCCATTCT CTAGAACTCC AAAAGGCCCC AGCCCATCCC
  TTCCCCTTAC TAAAATATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48054243	NES12079486	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31455393					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48054243	NES12079486	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76966083 () rs orientation: forward

Symbol	Name	Function Class
Gm53899	predicted gene, 53899	within coordinates
Rbfox2	RNA binding protein, fox-1 homolog (C. elegans) 2	within coordinates
Rr504939	regulatory region 504939	1656 bp distal
Rr504940	regulatory region 504940	661 bp distal
Rr504941	regulatory region 504941	347 bp distal
Rr504942	regulatory region 504942	316 bp distal