rs31455834 SNP Detail

Summary

• ID
  rs31455834
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:76901136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTAGCAGG TAGATAGTAA
  GCTGAGATTA GACCCAGGGA CTGTGGACAC ACCCCTGCTA GCTCAGGAGT GGGGGTACAG
  CTGCTGTTTT GGGCTGGGGC CCTTATGTGC AAGTGACACA GCAGAGATGA GAGTGGGACA
  CAGCAGAAGG GGACACCGAG GGACACAAGT GCACCCAGAG GCACAGGACA TCTTTGCAAA
  Y
  ACACCTCTGG GAAATCTGCC TCACAATTCA CAGATACAGA AACGTCTGTG GAGCCTGGGT
  CTGCGGAACC AGCCCCAGCT TCAGGGAGGC TGGGTATGTG TCTGGCCCTG CCCTGCTCTG
  CCCTGCTCTG CCCTGCTCTG CCCTGTGACT CCAGTTGCAA AATGAAGACA GACAGGACCC
  CACTGAGGGC TGCTGGCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48053845	NES12082114	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31455834					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48053845	NES12082114	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76901136 () rs orientation: forward

Symbol	Name	Function Class
Gm49540	predicted gene, 49540	1038 bp downstream
Gm52199	predicted gene, 52199	1876 bp upstream
Mb	myoglobin	Intron
Rr504918	regulatory region 504918	1450 bp distal
Rr504919	regulatory region 504919	1741 bp proximal
Rr504920	regulatory region 504920	1969 bp proximal
Tssr131853	transcription start site region 131853	1149 bp downstream
Tssr131854	transcription start site region 131854	1098 bp downstream
Tssr131855	transcription start site region 131855	980 bp downstream
Tssr131856	transcription start site region 131856	900 bp downstream
Tssr131857	transcription start site region 131857	695 bp upstream
Tssr131858	transcription start site region 131858	771 bp upstream
Tssr135064	transcription start site region 135064	858 bp upstream
Tssr135065	transcription start site region 135065	708 bp downstream