rs31456327 SNP Detail

Summary

• ID
  rs31456327
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:76966953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACCAGGGA GCCAGCTGAC
  ATTCCCATTT CCTAATGCCT TCATTTTGGA GCCTCTGTGG GACCCTTGCC TTTCGGATAC
  ATCTCAGATT TGGGGGAGAA AGAAGTCCTT TGGAAACAAA TCTGAAGCCA GGTTTCACTG
  CCATGGCCCC TGCAGAAGGA CCCTTGCCAT TTTACATCCT CCTTCCAAGG TTAAAAGGCT
  K
  AAAGTCCACG GCCTGTCTTC TTAACGTTCC CCGAGGGGTC CAGGTGCTTG GCTGTGACTC
  TAGAGGACAC TGTGAAGCTG GATGCAGTGA CCACAAGGGC TGGAGACTCA CAGAGGCTCT
  GGAAGATGGA AATTCCTATG GCTTTGGAGT GAGGACAAAC TGCCTCTGCC TGCCCTTACT
  GGTCCTCATC AGTACACTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48054247	NES12079492	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31456327					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48054247	NES12079492	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76966953 () rs orientation: forward

Symbol	Name	Function Class
1700109K24Rik	RIKEN cDNA 1700109K24 gene	1645 bp upstream
Gm53899	predicted gene, 53899	646 bp downstream
Rbfox2	RNA binding protein, fox-1 homolog (C. elegans) 2	within coordinates
Rr504940	regulatory region 504940	1531 bp distal
Rr504941	regulatory region 504941	1217 bp distal
Rr504942	regulatory region 504942	1186 bp distal
Tssr131860	transcription start site region 131860	1614 bp upstream