rs31456876 SNP Detail

Summary

• ID
  rs31456876
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:18915158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTCCCAGGG CCGGAAGCGG CGGGGCCGGT CCGGGCTCCA
  CCCCGGACCC GAAGCTCCGC CAGCAGCCGC CATGAGTAGT TTTGGAATTG GGTGAGACCC
  W
  CTTTCAGCAC CCCTCCTCCC TCCTCCTGCC CTTCTCGCCT CAGGAAGAGA AGGTGGAGAC
  ACGCCCCTTC CTCTGAACTT TTCATCGTCT TCCTGGCTG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46034729	mCV22832426	ABI	CRAMUS_MOUSE	f	SNP	T	A	T	A
ss148469640	ENSMUSSNP3481438	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A		A
ss322116613	CHEV_7_19766582	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31456876					SNP	T	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18915158 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Eml2	echinoderm microtubule associated protein like 2			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Mir330	microRNA 330			232 bp upstream
Rr643019	regulatory region 643019			1895 bp distal
Rr643020	regulatory region 643020			19 bp distal
Rr643021	regulatory region 643021			within coordinates
Tssr64797	transcription start site region 64797			31 bp downstream
Tssr64798	transcription start site region 64798			12 bp downstream
Tssr64799	transcription start site region 64799			60 bp upstream
Tssr64800	transcription start site region 64800			174 bp upstream